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Have you checked your Journal (J)? You referenced percentages, so thats likely. Is there a list of items that you need to have collected before returning to doc grog? The ray of light will often point to where you need to return your items even if you do not have them all. I'd review the list of various things you need to acquire, make sure you have them all, and return to Doc Grog then.
Not sure what else may be going on. I have not heard of any bug like this.
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